JASPAR CORE

Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0054.1 myb.Ph3 Petunia x hybrida Tryptophan cluster factors Myb
MA0056.1 MZF1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0056.2 MZF1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0058.1 MAX Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0058.2 MAX Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0058.3 MAX Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0059.1 MAX::MYC Homo sapiens Basic helix-loop-helix factors (bHLH)::Basic helix-loop-helix factors (bHLH) bHLH-ZIP::bHLH-ZIP
MA0060.1 NFYA Xenopus laevis Xenopus tropicalis Gallus gallus Homo sapiens Bos taurus Oryctolagus cuniculus Mus musculus Rattus norvegicus Other alpha NFY
MA0060.2 NFYA Homo sapiens Other alpha NFY
MA0060.3 NFYA Homo sapiens Other alpha NFY
MA0062.1 GABPA Homo sapiens Tryptophan cluster factors Ets-related
MA0062.2 Gabpa Mus musculus Tryptophan cluster factors Ets-related
MA0062.3 GABPA Homo sapiens Tryptophan cluster factors Ets-related
MA0063.1 Nkx2-5 Mus musculus Homeo domain factors NK
MA0063.2 NKX2-5 Homo sapiens Homeo domain factors NK
MA0064.1 PBF Zea mays Other C4 zinc finger-type factors DOF
MA0065.1 PPARG::RXRA Homo sapiens Nuclear receptors with C4 zinc fingers::Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2)
MA0065.2 Pparg::Rxra Mus musculus Nuclear receptors with C4 zinc fingers::Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2)
MA0066.1 PPARG Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA0067.1 Pax2 Mus musculus Paired box factors Paired domain only
MA0067.2 PAX2 Homo sapiens Paired box factors Paired domain only
MA0068.1 Pax4 Mus musculus Paired box factors Paired plus homeo domain
MA0068.2 PAX4 Homo sapiens Paired box factors Paired plus homeo domain
MA0069.1 PAX6 Homo sapiens Paired box factors Paired plus homeo domain
MA0070.1 PBX1 Homo sapiens Homeo domain factors TALE-type homeo domain factors
MA0071.1 RORA Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA0072.1 RORA Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA0073.1 RREB1 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0074.1 RXRA::VDR Homo sapiens Nuclear receptors with C4 zinc fingers::Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)::Thyroid hormone receptor-related factors (NR1)
MA0075.1 Prrx2 Mus musculus Homeo domain factors Paired-related HD factors
MA0075.2 Prrx2 Mus musculus Homeo domain factors Paired-related HD factors
MA0075.3 PRRX2 Homo sapiens Homeo domain factors Paired-related HD factors
MA0076.1 ELK4 Homo sapiens Tryptophan cluster factors Ets-related
MA0076.2 ELK4 Homo sapiens Tryptophan cluster factors Ets-related
MA0077.1 SOX9 Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
MA0078.1 Sox17 Mus musculus High-mobility group (HMG) domain factors SOX-related factors
MA0078.2 Sox17 Mus musculus High-mobility group (HMG) domain factors SOX-related factors
MA0079.1 SP1 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0079.2 SP1 Homo sapiens Mus musculus Rattus norvegicus C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0079.3 SP1 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0079.4 SP1 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0079.5 SP1 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0080.1 SPI1 Homo sapiens Tryptophan cluster factors Ets-related
MA0080.2 SPI1 Homo sapiens Tryptophan cluster factors Ets-related
MA0080.3 Spi1 Mus musculus Tryptophan cluster factors Ets-related
MA0080.4 SPI1 Homo sapiens Tryptophan cluster factors Ets-related
MA0080.5 SPI1 Homo sapiens Tryptophan cluster factors Ets-related
MA0080.6 Spi1 Mus musculus Tryptophan cluster factors Ets-related
MA0081.1 SPIB Homo sapiens Tryptophan cluster factors Ets-related
MA0081.2 SPIB Homo sapiens Tryptophan cluster factors Ets-related
MA0082.1 squamosa Antirrhinum majus MADS box factors MIKC
MA0083.1 SRF Homo sapiens MADS box factors Responders to external signals (SRF/RLM1)
MA0083.2 SRF Homo sapiens MADS box factors Responders to external signals (SRF/RLM1)
MA0083.3 SRF Homo sapiens MADS box factors Responders to external signals (SRF/RLM1)
MA0084.1 SRY Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
MA0085.1 Su(H) Drosophila melanogaster
MA0086.1 sna Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0086.2 sna Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0087.1 Sox5 Mus musculus High-mobility group (HMG) domain factors SOX-related factors
MA0087.2 Sox5 Mus musculus High-mobility group (HMG) domain factors SOX-related factors
MA0088.1 znf143 Xenopus laevis C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0088.2 ZNF143 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0089.1 MAFG::NFE2L1 Gallus gallus Basic leucine zipper factors (bZIP)::Basic leucine zipper factors (bZIP) Maf-related::Jun-related
MA0089.2 MAFG::NFE2L1 Homo sapiens Basic leucine zipper factors (bZIP)::Basic leucine zipper factors (bZIP) Maf-related::Jun-related
MA0090.1 TEAD1 Homo sapiens TEA domain factors TEF-1-related factors
MA0090.2 TEAD1 Homo sapiens TEA domain factors TEF-1-related factors
MA0090.3 TEAD1 Homo sapiens TEA domain factors TEF-1-related factors
MA0091.1 TAL1::TCF3 Homo sapiens Basic helix-loop-helix factors (bHLH)::Basic helix-loop-helix factors (bHLH) Tal-related::E2A
MA0092.1 Hand1::Tcf3 Mus musculus Basic helix-loop-helix factors (bHLH)::Basic helix-loop-helix factors (bHLH) Tal-related::E2A
MA0093.1 USF1 Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0093.2 USF1 Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0093.3 USF1 Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0094.1 Ubx Drosophila melanogaster Homeo domain factors HOX
MA0094.2 Ubx Drosophila melanogaster Homeo domain factors HOX
MA0095.1 YY1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0095.2 YY1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0095.3 Yy1 Mus musculus C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0096.1 bZIP910 Antirrhinum majus Basic leucine zipper factors (bZIP) Group S
MA0097.1 bZIP911 Antirrhinum majus Basic leucine zipper factors (bZIP) Group S
MA0098.1 ETS1 Homo sapiens Tryptophan cluster factors Ets-related
MA0098.2 Ets1 Mus musculus Tryptophan cluster factors Ets-related
MA0098.3 ETS1 Homo sapiens Tryptophan cluster factors Ets-related
MA0099.1 Fos::Jun Mus musculus Basic leucine zipper factors (bZIP)::Basic leucine zipper factors (bZIP) Fos-related::Jun-related
MA0099.2 FOS::JUN Homo sapiens Mus musculus Rattus norvegicus Basic leucine zipper factors (bZIP)::Basic leucine zipper factors (bZIP) Fos-related::Jun-related
MA0099.3 FOS::JUN Homo sapiens Basic leucine zipper factors (bZIP)::Basic leucine zipper factors (bZIP) Fos-related::Jun-related
MA0100.1 Myb Mus musculus Tryptophan cluster factors Myb/SANT domain factors
MA0100.2 Myb Mus musculus Tryptophan cluster factors Myb/SANT domain factors
MA0100.3 MYB Homo sapiens Tryptophan cluster factors Myb/SANT domain factors
MA0101.1 REL Homo sapiens Rel homology region (RHR) factors NF-kappaB-related factors
MA0102.1 Cebpa Mus musculus Rattus norvegicus Basic leucine zipper factors (bZIP) CEBP-related
MA0102.2 CEBPA Mus musculus Rattus norvegicus Basic leucine zipper factors (bZIP) CEBP-related
MA0102.3 CEBPA Homo sapiens Basic leucine zipper factors (bZIP) CEBP-related
MA0102.4 CEBPA Homo sapiens Basic leucine zipper factors (bZIP) CEBP-related
MA0103.1 ZEB1 Gallus gallus Homeo domain factors HD-ZF factors
MA0103.2 ZEB1 Homo sapiens Homeo domain factors HD-ZF factors
MA0103.3 ZEB1 Homo sapiens Homeo domain factors HD-ZF factors
MA0104.1 Mycn Mus musculus Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0104.2 Mycn Mus musculus Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0104.3 Mycn Mus musculus Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0104.4 MYCN Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
Showing 100 profiles of page 2 from 25 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.


You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)

Relative profile score threshold %

Cluster selected models using STAMP tool.




You can use the Newick tree from results to visualize on PhyloTree

Create random matrix models based on selected models.


Create models with permuted columns from selected models.


Download the PFMs of the model(s) selected in four different formats.