Detailed information of matrix profile MA0080.4

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Profile summary
Name: SPI1
Matrix ID: MA0080.4
Class: Tryptophan cluster factors
Family: Ets-related
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 17916232
Uniprot ID: P17947  
Source: 23332764
Comment:

Sequence logo

Frequency matrix

         
A [ 3946 4976 5053 5044 4868 49 1793 29 0 5105 5122 0 21 2535 ]
C [ 555 26 2 0 4 246 4068 1 1 2 1 184 69 288 ]
G [ 1142 377 8 0 15 5255 727 5300 5330 0 1 5246 12 733 ]
T [ 476 82 30 99 524 2 1 2 0 1 5 1 4962 1439 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0080.1 MA0080 1 SPI1 Homo sapiens
Ets-related Tryptophan cluster factors
MA0080.2 MA0080 2 SPI1 Homo sapiens
Ets-related Tryptophan cluster factors
MA0080.3 MA0080 3 Spi1 Mus musculus
Ets-related Tryptophan cluster factors
MA0080.4 MA0080 4 SPI1 Homo sapiens
Ets-related Tryptophan cluster factors
MA0080.5 MA0080 5 SPI1 Homo sapiens
Ets-related Tryptophan cluster factors
MA0080.6 MA0080 6 Spi1 Mus musculus
Ets-related Tryptophan cluster factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0099.1

ChIP-seq Centrality
log(P-value): -76347.7

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0099.1

ChIP-seq Centrality
log(P-value): -74739.5

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: