Browse JASPAR CORE for 6 different taxonomic groups
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About JASPAR CORE
The JASPAR CORE database contains a curated, non-redundant set of profiles, derived from published collections of experimentally defined transcription factor binding sites for eukaryotes. The prime difference to similar resources (TRANSFAC, etc.) consist of the open data access, non-redundancy and quality.
When should it be used? When seeking models for specific factors or structural classes, or if experimental evidence is paramount
The high-quality transcription factor binding profile database
Read more about JASPAR
Castro-Mondragon JA, Riudavets-Puig R, Rauluseviciute I, Berhanu Lemma R, Turchi L, Blanc-Mathieu R, Lucas J, Boddie P, Khan A, Manosalva Pérez N, Fornes O, Leung TY, Aguirre A, Hammal F, Schmelter D, Baranasic D, Ballester B, Sandelin A, Lenhard B, Vandepoele K, Wasserman WW, Parcy F, and Mathelier A JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles Nucleic Acids Res. 2022 Jan 7;50(D1):D165-D173.;
doi: 10.1093/nar/gkab1113
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RESTful API
Access JASPAR database programmatically
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Batch download PFMs, TFFMs, sites, and more
pyJASPAR
A Pythonic interface to JASPAR motifs