Detailed information of matrix profile MA0078.2

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Profile summary
Name: Sox17
Matrix ID: MA0078.2
Class: High-mobility group (HMG) domain factors
Family: SOX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type:
Validation: 8636240
Uniprot ID: Q61473  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 3418 3470 7836 2720 8708 11818 271 11906 11634 1005 1324 1224 3683 3358 ]
C [ 2633 3370 957 885 1111 124 11241 140 258 138 251 1012 3373 3176 ]
G [ 3349 3116 1889 6638 1561 163 490 105 281 189 10241 9181 3024 2756 ]
T [ 2887 2331 1605 2044 907 182 285 136 114 10955 471 870 2207 2997 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0078.1 MA0078 1 Sox17 Mus musculus
SOX-related factors High-mobility group (HMG) domain factors
MA0078.2 MA0078 2 Sox17 Mus musculus
SOX-related factors High-mobility group (HMG) domain factors
     

log(P-value) = 30.3023

TFFM details

TFFM ID: TFFM0711.1

ChIP-seq Centrality
log(P-value): -1404.67

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0711.1

ChIP-seq Centrality
log(P-value): -1310.36

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: