JASPAR CORE

  1. Home
  2. Collection CORE

Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0105.1 NFKB1 Homo sapiens Oryctolagus cuniculus Mus musculus Rattus norvegicus Rel homology region (RHR) factors NF-kappaB-related factors
MA0105.2 NFKB1 Homo sapiens Rel homology region (RHR) factors NF-kappaB-related factors
MA0105.3 NFKB1 Homo sapiens Rel homology region (RHR) factors NF-kappaB-related factors
MA0105.4 NFKB1 Homo sapiens Rel homology region (RHR) factors NF-kappaB-related factors
MA0106.1 TP53 Homo sapiens p53 domain factors p53-related factors
MA0106.2 TP53 Homo sapiens p53 domain factors p53-related factors
MA0106.3 TP53 Homo sapiens p53 domain factors p53-related factors
MA0107.1 RELA Homo sapiens Rel homology region (RHR) factors NF-kappaB-related factors
MA0108.1 TBP NA TATA-binding proteins TBP-related factors
MA0108.2 TBP NA TATA-binding proteins TBP-related factors
MA0110.1 ATHB-5 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0110.2 ATHB-5 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0110.3 ATHB-5 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0111.1 Spz1 Mus musculus Basic helix-loop-helix factors (bHLH)
MA0112.1 ESR1 Xenopus laevis Xenopus tropicalis Gallus gallus Homo sapiens Bos taurus Oryctolagus cuniculus Mus musculus Rattus norvegicus Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0112.2 ESR1 Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0112.3 ESR1 Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0113.1 NR3C1 Oncorhynchus mykiss Gallus gallus Homo sapiens Mus musculus Rattus norvegicus Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0113.2 NR3C1 Mus musculus Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0113.3 NR3C1 Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0114.1 HNF4A NA Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0114.2 HNF4A Homo sapiens Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0114.3 Hnf4a Mus musculus Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0114.4 HNF4A Homo sapiens Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0115.1 NR1H2::RXRA Homo sapiens Nuclear receptors with C4 zinc fingers::Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2)
MA0116.1 Znf423 Rattus norvegicus C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0117.1 Mafb Rattus norvegicus Basic leucine zipper factors (bZIP) Maf-related
MA0117.2 Mafb Mus musculus Basic leucine zipper factors (bZIP) Maf-related
MA0118.1 Macho-1 Halocynthia roretzi C2H2 zinc finger factors
MA0119.1 NFIC::TLX1 Homo sapiens SMAD/NF-1 DNA-binding domain factors::Homeo domain factors Nuclear factor 1::NK
MA0121.1 ARR10 Arabidopsis thaliana Tryptophan cluster factors GARP_ARR-B
MA0122.1 Nkx3-2 Mus musculus Homeo domain factors NK
MA0122.2 NKX3-2 Homo sapiens Homeo domain factors NK
MA0122.3 Nkx3-2 Mus musculus Homeo domain factors NK
MA0123.1 abi4 Zea mays AP2/EREBP ERF/DREB
MA0124.1 NKX3-1 Homo sapiens Homeo domain factors NK
MA0124.2 Nkx3-1 Mus musculus Homeo domain factors NK
MA0125.1 Nobox Mus musculus Homeo domain factors Paired-related HD factors
MA0126.1 ovo Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0127.1 PEND Pisum sativum
MA0128.1 EmBP-1 Triticum aestivum Basic leucine zipper factors (bZIP) Group G
MA0129.1 TGA1A Nicotiana sp. Basic leucine zipper factors (bZIP) Group D
MA0130.1 ZNF354C Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0131.1 HINFP Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0131.2 HINFP Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0132.1 Pdx1 Mus musculus Homeo domain factors HOX
MA0132.2 PDX1 Homo sapiens Homeo domain factors HOX
MA0135.1 Lhx3 Mus musculus Homeo domain factors HD-LIM
MA0136.1 ELF5 Mus musculus Tryptophan cluster factors Ets-related
MA0136.2 ELF5 Homo sapiens Tryptophan cluster factors Ets-related
MA0136.3 Elf5 Mus musculus Tryptophan cluster factors Ets-related
MA0137.1 STAT1 Homo sapiens STAT domain factors STAT factors
MA0137.2 STAT1 Homo sapiens STAT domain factors STAT factors
MA0137.3 STAT1 Homo sapiens STAT domain factors STAT factors
MA0138.1 REST Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0138.2 REST Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0139.1 CTCF Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0140.1 Gata1::Tal1 Mus musculus Other C4 zinc finger-type factors::Basic helix-loop-helix factors (bHLH) C4-GATA-related::Tal-related
MA0140.2 GATA1::TAL1 Homo sapiens Other C4 zinc finger-type factors::Basic helix-loop-helix factors (bHLH) C4-GATA-related::Tal-related
MA0141.1 Esrrb Mus musculus Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0141.2 Esrrb Mus musculus Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0141.3 ESRRB Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0142.1 Pou5f1::Sox2 Mus musculus Homeo domain factors::High-mobility group (HMG) domain factors POU domain factors::SOX-related factors
MA0143.1 Sox2 Mus musculus High-mobility group (HMG) domain factors SOX-related factors
MA0143.2 Sox2 Mus musculus High-mobility group (HMG) domain factors SOX-related factors
MA0143.3 Sox2 Mus musculus High-mobility group (HMG) domain factors SOX-related factors
MA0143.4 SOX2 Homo sapiens High-mobility group (HMG) domain factors SOX-related factors
MA0144.1 Stat3 Mus musculus STAT domain factors STAT factors
MA0144.2 STAT3 Homo sapiens STAT domain factors STAT factors
MA0145.1 Tfcp2l1 Mus musculus Grainyhead domain factors CP2-related factors
MA0145.2 Tfcp2l1 Mus musculus Grainyhead domain factors CP2-related factors
MA0146.1 Zfx Mus musculus C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0146.2 Zfx Mus musculus C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0147.1 Myc Mus musculus Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0147.2 Myc Mus musculus Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0147.3 MYC Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0148.1 FOXA1 Homo sapiens Fork head/winged helix factors FOX
MA0148.2 FOXA1 Homo sapiens Fork head/winged helix factors FOX
MA0148.3 FOXA1 Homo sapiens Fork head/winged helix factors FOX
MA0148.4 FOXA1 Homo sapiens Fork head/winged helix factors FOX
MA0149.1 EWSR1-FLI1 Homo sapiens Tryptophan cluster factors Ets-related
MA0150.1 NFE2L2 Homo sapiens Basic leucine zipper factors (bZIP) Jun-related
MA0150.2 Nfe2l2 Mus musculus Basic leucine zipper factors (bZIP) Jun-related
MA0151.1 Arid3a Mus musculus ARID ARID-related
MA0152.1 NFATC2 Homo sapiens Mus musculus Rattus norvegicus Rel homology region (RHR) factors NFAT-related factors
MA0152.2 Nfatc2 Mus musculus Rel homology region (RHR) factors NFAT-related factors
MA0153.1 HNF1B Homo sapiens Mus musculus Homeo domain factors POU domain factors
MA0153.2 HNF1B Homo sapiens Homeo domain factors POU domain factors
MA0154.1 EBF1 Mus musculus Rel homology region (RHR) factors Early B-Cell Factor-related factors
MA0154.2 EBF1 Homo sapiens Rel homology region (RHR) factors Early B-Cell Factor-related factors
MA0154.3 EBF1 Homo sapiens Rel homology region (RHR) factors Early B-Cell Factor-related factors
MA0154.4 EBF1 Homo sapiens Rel homology region (RHR) factors Early B-Cell Factor-related factors
MA0155.1 INSM1 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0156.1 FEV Homo sapiens Rattus norvegicus Tryptophan cluster factors Ets-related
MA0156.2 FEV Homo sapiens Tryptophan cluster factors Ets-related
MA0156.3 FEV Homo sapiens Tryptophan cluster factors Ets-related
MA0157.1 FOXO3 Homo sapiens Mus musculus Fork head/winged helix factors FOX
MA0157.2 FOXO3 Homo sapiens Fork head/winged helix factors FOX
MA0157.3 Foxo3 Mus musculus Fork head/winged helix factors FOX
MA0158.1 HOXA5 Homo sapiens Mus musculus Homeo domain factors HOX
Showing 100 profiles of page 3 from 25 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.