JASPAR CORE

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Total 2430 profiles

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ID Name Species Class Family Sequence logo
MA0105.1 NFKB1 Homo sapiens Oryctolagus cuniculus Mus musculus Rattus norvegicus Rel homology region (RHR) factors NF-kappaB-related factors
MA0105.2 NFKB1 Homo sapiens Rel homology region (RHR) factors NF-kappaB-related factors
MA0105.3 NFKB1 Homo sapiens Rel homology region (RHR) factors NF-kappaB-related factors
MA0105.4 NFKB1 Homo sapiens Rel homology region (RHR) factors NF-kappaB-related factors
MA0106.1 TP53 Homo sapiens p53 domain factors p53-related factors
MA0106.2 TP53 Homo sapiens p53 domain factors p53-related factors
MA0106.3 TP53 Homo sapiens p53 domain factors p53-related factors
MA0107.1 RELA Homo sapiens Rel homology region (RHR) factors NF-kappaB-related factors
MA0108.1 TBP NA TATA-binding proteins TBP-related factors
MA0108.2 TBP NA TATA-binding proteins TBP-related factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.