Detailed information of matrix profile UN0412.1

  1. Home
  2. Matrix > UN0412.1
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: VFP5
Matrix ID: UN0412.1
Class: Tryptophan cluster factors
Family: Trihelix
Collection: UNVALIDATED
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation:
Uniprot ID: F4K0Q7  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 304 322 206 12 144 2 0 0 87 0 59 661 161 309 388 ]
C [ 255 136 104 596 15 998 1000 0 114 832 29 45 357 126 102 ]
G [ 119 164 76 5 206 0 0 1000 757 0 911 193 119 435 208 ]
T [ 322 378 614 388 634 0 0 0 42 168 2 101 362 131 302 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0412.1 UN0412 1 VFP5 Arabidopsis thaliana
Trihelix Tryptophan cluster factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: