Detailed information of matrix profile MA1532.2

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Profile summary
Name: NR1D2
Matrix ID: MA1532.2
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 14559106
Uniprot ID: Q14995  
Source: 26550823
Comment:

Sequence logo

Frequency matrix

         
A [ 538 7273 57177 69 13104 127 60489 2922 309 30822 58858 37 4734 256 57431 ]
C [ 9354 924 5189 61054 57509 40772 969 50343 2 13 4341 60974 58866 30693 5429 ]
G [ 44 56830 2348 81 25 439 466 7626 0 30265 481 20 85 939 1877 ]
T [ 56565 42 1549 262 63 44879 67 3894 60895 26 28 107 66 29828 804 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1532.1 MA1532 1 NR1D2 Homo sapiens
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
MA1532.2 MA1532 2 NR1D2 Homo sapiens
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0866.1

ChIP-seq Centrality
log(P-value): -1294.06

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0866.1

ChIP-seq Centrality
log(P-value): -1256.01

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: