Detailed information of matrix profile MA0583.1

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Profile summary
Name: RAV1
Matrix ID: MA0583.1
Class: B3
Family: RAV
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: SELEX
Validation: 9862967
Uniprot ID: Q9ZWM9  
Source:
Comment: TF has several motif variants.

Sequence logo

Frequency matrix

         
A [ 13 10 9 5 0 65 0 5 11 7 28 18 ]
C [ 5 16 18 19 58 0 0 3 8 1 8 10 ]
G [ 20 14 15 7 0 0 65 56 6 49 15 12 ]
T [ 8 12 12 24 0 0 0 1 40 8 13 22 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0583.1 MA0583 1 RAV1 Arabidopsis thaliana
RAV B3
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0743.1

ChIP-seq Centrality
log(P-value): -676.754

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0743.1

ChIP-seq Centrality
log(P-value): -742.414

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: