Detailed information of matrix profile MA0009.2

  1. Home
  2. Matrix > MA0009.2

Profile summary
Name: TBXT
Matrix ID: MA0009.2
Class: T-Box factors
Family: Brachyury-related factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 7588606
Uniprot ID: O15178  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 52 2241 3816 0 4107 218 2277 629 4161 1066 665 0 12 504 373 4171 ]
C [ 156 4778 55 5262 0 5104 4418 611 121 2004 135 190 0 2352 1237 12 ]
G [ 22 1321 1415 0 141 111 1667 214 491 5819 7304 13 7628 69 7058 111 ]
T [ 6886 254 217 2 0 400 809 6551 417 2921 366 6777 0 5975 1657 17 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0009.1 MA0009 1 Tbxt Mus musculus
Brachyury-related factors T-Box factors
MA0009.2 MA0009 2 TBXT Homo sapiens
Brachyury-related factors T-Box factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0704.1

ChIP-seq Centrality
log(P-value): -5908.47

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0704.1

ChIP-seq Centrality
log(P-value): -6793.75

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: