JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0675.1 NKX6-2 Homo sapiens Homeo domain factors NK
MA0676.1 Nr2e1 Mus musculus Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0677.1 Nr2f6 Mus musculus Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0678.1 OLIG2 Homo sapiens Basic helix-loop-helix factors (bHLH) Tal-related
MA0679.1 ONECUT1 Homo sapiens Homeo domain factors HD-CUT
MA0679.2 ONECUT1 Homo sapiens Homeo domain factors HD-CUT
MA0680.1 PAX7 Homo sapiens Paired box factors Paired plus homeo domain
MA0680.2 Pax7 Mus musculus Paired box factors Paired plus homeo domain
MA0681.1 Phox2b Mus musculus Homeo domain factors Paired-related HD factors
MA0681.2 PHOX2B Homo sapiens Homeo domain factors Paired-related HD factors
Showing 10 profiles of page 94 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.