JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0643.1 Esrrg Mus musculus Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0644.1 ESX1 Homo sapiens Homeo domain factors Paired-related HD factors
MA0644.2 ESX1 Homo sapiens Homeo domain factors Paired-related HD factors
MA0645.1 ETV6 Homo sapiens Tryptophan cluster factors Ets-related
MA0646.1 GCM1 Homo sapiens GCM domain factors GCM
MA0647.1 GRHL1 Homo sapiens Grainyhead domain factors Grainyhead-related factors
MA0648.1 GSC Homo sapiens Homeo domain factors Paired-related HD factors
MA0649.1 HEY2 Homo sapiens Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA0650.1 HOXA13 Homo sapiens Homeo domain factors HOX
MA0650.2 HOXA13 Homo sapiens Homeo domain factors HOX
Showing 10 profiles of page 90 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.