JASPAR CORE

  1. Home
  2. Collection core

Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1718.1 ZNF8 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1719.1 ZNF816 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1720.1 ZNF85 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1721.1 ZNF93 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1722.1 ZSCAN31 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1723.1 PRDM9 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1724.1 Rfx6 Mus musculus Fork head/winged helix factors RFX-related factors
MA1725.1 ZNF189 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1726.1 ZNF331 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1727.1 ZNF417 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1728.1 ZNF549 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1729.1 ZNF680 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1730.1 ZNF708 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1731.1 ZNF768 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1732.1 E2FD Arabidopsis thaliana Fork head/winged helix factors E2F
MA1733.1 ASR3 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA1734.1 AT1G19040 Arabidopsis thaliana GCM domain factors NAC
MA1735.1 AT2G38300 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1736.1 AT5G04390 Arabidopsis thaliana C2H2 zinc finger factors
MA1737.1 AT5G05090 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1738.1 ATMYB31 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1739.1 BHLH122 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA1740.1 BHLH49 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA1741.1 BRN2 Arabidopsis thaliana GCM domain factors NAC
MA1742.1 BZIP18 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group I
Showing 25 profiles of page 85 from 98 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.