JASPAR CORE

  1. Home
  2. Collection core

Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1272.2 DOF2.2 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA1273.1 DOF4.2 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA1274.1 DOF3.6 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA1275.1 DOF1.6 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA1276.1 DOF3.5 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA1277.1 DOF1.7 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA1278.1 DOF3.4 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA1279.1 DOF1.5 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA1280.1 DOF5.4 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA1281.1 DOF5.1 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA1282.1 TCP13 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP
MA1283.1 TCP14 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP
MA1284.1 TCP1 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP
MA1285.1 TCP9 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP
MA1286.1 TCP24 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP
MA1287.1 TCP21 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP
MA1288.1 TCP22 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP
MA1289.1 TCP3 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP
MA1290.1 TCP17 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP
MA1291.1 TCP7 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP
MA1292.1 MYB27 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1293.1 MYB57 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1294.1 MYB62 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1295.1 WRKY20 Arabidopsis thaliana GCM domain factors WRKY
MA1296.1 WRKY46 Arabidopsis thaliana GCM domain factors WRKY
Showing 25 profiles of page 67 from 98 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.