JASPAR CORE

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Total 2430 profiles

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ID Name Species Class Family Sequence logo
MA0895.1 HMBOX1 Homo sapiens Homeo domain factors POU domain factors
MA0896.1 Hmx1 Mus musculus Homeo domain factors NK
MA0897.1 Hmx2 Mus musculus Homeo domain factors NK
MA0898.1 Hmx3 Mus musculus Homeo domain factors NK
MA0899.1 HOXA10 Homo sapiens Homeo domain factors HOX
MA0900.1 HOXA2 Homo sapiens Homeo domain factors HOX
MA0900.2 HOXA2 Homo sapiens Homeo domain factors HOX
MA0901.1 HOXB13 Homo sapiens Homeo domain factors HOX
MA0901.2 HOXB13 Homo sapiens Homeo domain factors HOX
MA0902.1 HOXB2 Homo sapiens Homeo domain factors HOX
MA0902.2 HOXB2 Homo sapiens Homeo domain factors HOX
MA0903.1 HOXB3 Homo sapiens Homeo domain factors HOX
MA0904.1 Hoxb5 Mus musculus Homeo domain factors HOX
MA0904.2 HOXB5 Homo sapiens Homeo domain factors HOX
MA0905.1 HOXC10 Homo sapiens Homeo domain factors HOX
MA0906.1 HOXC12 Homo sapiens Homeo domain factors HOX
MA0907.1 HOXC13 Homo sapiens Homeo domain factors HOX
MA0908.1 HOXD11 Homo sapiens Homeo domain factors HOX
MA0909.1 HOXD13 Homo sapiens Homeo domain factors HOX
MA0909.2 HOXD13 Homo sapiens Homeo domain factors HOX
MA0909.3 Hoxd13 Mus musculus Homeo domain factors HOX
MA0910.1 Hoxd8 Mus musculus Homeo domain factors HOX
MA0910.2 HOXD8 Homo sapiens Homeo domain factors HOX
MA0911.1 Hoxa11 Mus musculus Homeo domain factors HOX
MA0912.1 Hoxd3 Mus musculus Homeo domain factors HOX
Showing 25 profiles of page 50 from 98 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.