JASPAR CORE

Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0612.2 EMX1 Homo sapiens Homeo domain factors NK
MA0613.1 FOXG1 Homo sapiens Fork head/winged helix factors FOX
MA0614.1 Foxj2 Mus musculus Fork head/winged helix factors FOX
MA0615.1 Gmeb1 Mus musculus SAND domain factors GMEB
MA0616.1 Hes2 Mus musculus Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA0616.2 HES2 Homo sapiens Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA0618.1 LBX1 Homo sapiens Homeo domain factors NK
MA0619.1 LIN54 Gallus gallus CRC domain
MA0620.1 Mitf Mus musculus Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0620.2 MITF Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0620.3 MITF Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0621.1 mix-a Xenopus laevis Homeo domain factors Paired-related HD factors
MA0622.1 Mlxip Mus musculus Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0623.1 Neurog1 Mus musculus Basic helix-loop-helix factors (bHLH) Tal-related
MA0623.2 NEUROG1 Homo sapiens Basic helix-loop-helix factors (bHLH) Tal-related
MA0624.1 NFATC1 Meleagris gallopavo Rel homology region (RHR) factors NFAT-related factors
MA0624.2 Nfatc1 Mus musculus Rel homology region (RHR) factors NFAT-related factors
MA0625.1 NFATC3 Homo sapiens Rel homology region (RHR) factors NFAT-related factors
MA0625.2 NFATC3 Homo sapiens Rel homology region (RHR) factors NFAT-related factors
MA0626.1 Npas2 Mus musculus Basic helix-loop-helix factors (bHLH) PAS domain factors
MA0627.1 Pou2f3 Mus musculus Homeo domain factors POU domain factors
MA0627.2 POU2F3 Homo sapiens Homeo domain factors POU domain factors
MA0628.1 POU6F1 Homo sapiens Homeo domain factors POU domain factors
MA0629.1 Rhox11 Mus musculus Homeo domain factors Paired-related HD factors
MA0630.1 SHOX Homo sapiens Homeo domain factors Paired-related HD factors
Showing 25 profiles of page 35 from 98 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.


You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)

Relative profile score threshold %

Cluster selected models using STAMP tool.




You can use the Newick tree from results to visualize on PhyloTree

Create random matrix models based on selected models.


Create models with permuted columns from selected models.


Download the PFMs of the model(s) selected in four different formats.