JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0193.1 schlank Drosophila melanogaster Homeo domain factors
MA0194.1 Lim1 Drosophila melanogaster Homeo domain factors HD-LIM
MA0195.1 Lim3 Drosophila melanogaster Homeo domain factors HD-LIM
MA0196.1 NK7.1 Drosophila melanogaster Homeo domain factors NK
MA0197.1 nub Drosophila melanogaster Homeo domain factors POU domain factors
MA0197.2 nub Drosophila melanogaster Homeo domain factors POU domain factors
MA0198.1 OdsH Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0199.1 Optix Drosophila melanogaster Homeo domain factors HD-SINE
MA0200.1 Pph13 Drosophila melanogaster Homeo domain factors
MA0201.1 Ptx1 Drosophila melanogaster Homeo domain factors Paired-related HD factors
Showing 10 profiles of page 35 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.