JASPAR CORE

  1. Home
  2. Collection core

Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0577.2 SPL3 Arabidopsis thaliana C2H2 zinc finger factors SBP
MA0577.3 SPL3 Arabidopsis thaliana SBP
MA0578.1 SPL8 Arabidopsis thaliana C2H2 zinc finger factors SBP
MA0579.1 CDC5 Arabidopsis thaliana Tryptophan cluster factors Myb-related
MA0580.1 DYT1 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0581.1 LEC2 Arabidopsis thaliana B3 ABI3
MA0582.1 RAV1 Arabidopsis thaliana B3 RAV
MA0583.1 RAV1 Arabidopsis thaliana B3 RAV
MA0584.1 SEP1 Arabidopsis thaliana MADS box factors MIKC
MA0585.1 AGL1 Arabidopsis thaliana MADS box factors MIKC
MA0586.1 SPL14 Arabidopsis thaliana C2H2 zinc finger factors SBP
MA0586.2 SPL14 Arabidopsis thaliana C2H2 zinc finger factors SBP
MA0587.1 TCP16 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) TCP
MA0588.1 TGA1 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group D
MA0589.1 WRKY1 Arabidopsis thaliana GCM domain factors WRKY
MA0590.1 LFY Arabidopsis thaliana LEAFY
MA0591.1 Bach1::Mafk Mus musculus Basic leucine zipper factors (bZIP)::Basic leucine zipper factors (bZIP) Jun-related::Maf-related
MA0592.1 ESRRA Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0592.2 Esrra Mus musculus Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0592.3 ESRRA Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0593.1 FOXP2 Homo sapiens Fork head/winged helix factors FOX
MA0594.1 Hoxa9 Mus musculus Homeo domain factors HOX
MA0594.2 HOXA9 Homo sapiens Homeo domain factors HOX
MA0595.1 SREBF1 Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0596.1 SREBF2 Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
Showing 25 profiles of page 33 from 98 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.