JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2003.1 NKX2-4 Homo sapiens Homeo domain factors NK
MA2005.1 NAC016 Arabidopsis thaliana GCM domain factors NAC
MA2006.1 NAC020 Arabidopsis thaliana GCM domain factors NAC
MA2007.1 MYB107 Arabidopsis thaliana Tryptophan cluster factors Myb
MA2008.1 MYB99 Arabidopsis thaliana Tryptophan cluster factors Myb
MA2009.1 NAC010 Arabidopsis thaliana GCM domain factors NAC
MA2010.1 SMB Arabidopsis thaliana GCM domain factors NAC
MA2011.1 ERF010 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA2012.1 ERF023 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA2013.1 ERF115 Arabidopsis thaliana AP2/EREBP ERF/DREB
Showing 10 profiles of page 239 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.