JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1822.1 Zm00001d018571 Zea mays Basic leucine zipper factors (bZIP)
MA1823.1 Zm00001d027846 Zea mays Other C4 zinc finger-type factors DOF
MA1824.1 Zm00001d005692 Zea mays Homeo domain factors HD-ZIP
MA1825.1 Zm00001d044409 Zea mays Tryptophan cluster factors Myb-related
MA1826.1 bHLH145 Zea mays B3 ARF
MA1827.1 Zm00001d044785 Zea mays Tryptophan cluster factors GARP_G2-like
MA1828.1 Zm00001d038683 Zea mays Basic helix-loop-helix factors (bHLH) TCP
MA1829.1 Zm00001d035604 Zea mays Tryptophan cluster factors Myb
MA1830.1 Zm00001d015407 Zea mays Tryptophan cluster factors GARP_G2-like
MA1831.1 Zm00001d031796 Zea mays AP2/EREBP ERF/DREB
Showing 10 profiles of page 221 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.