JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1669.1 DREB1B Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1670.1 DREB1C Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1671.1 ERF118 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1672.1 GBF2 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group G
MA1673.1 LBD18 Arabidopsis thaliana Other C4 zinc finger-type factors LBD
MA1674.1 NAC017 Arabidopsis thaliana GCM domain factors NAC
MA1674.2 NAC017 Arabidopsis thaliana GCM domain factors NAC
MA1675.1 NAC029 Arabidopsis thaliana GCM domain factors NAC
MA1676.1 NAC062 Arabidopsis thaliana GCM domain factors NAC
MA1676.2 NAC062 Arabidopsis thaliana GCM domain factors NAC
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.