JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1487.1 FOXE1 Homo sapiens Fork head/winged helix factors FOX
MA1487.2 FOXE1 Homo sapiens Fork head/winged helix factors FOX
MA1489.1 FOXN3 Homo sapiens Fork head/winged helix factors FOX
MA1491.1 GLI3 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1491.2 GLI3 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1493.1 HES6 Homo sapiens Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA1494.1 HNF4A Homo sapiens Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA1495.1 HOXA1 Homo sapiens Homeo domain factors HOX
MA1496.1 HOXA4 Homo sapiens Homeo domain factors HOX
MA1497.1 HOXA6 Homo sapiens Homeo domain factors HOX
Showing 10 profiles of page 188 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.