JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1384.1 PHL7 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1385.1 AT2G40260 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1386.1 HHO3 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1386.2 HHO3 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1387.1 HRS1 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1388.1 PHL2 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1389.1 PHL1 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1390.1 HHO2 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1390.2 HHO2 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA1391.1 MYB33 Arabidopsis thaliana Tryptophan cluster factors Myb
Showing 10 profiles of page 178 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.