JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1365.2 AT5G47660 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA1366.1 DF1 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA1367.1 AT1G76870 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA1368.1 GT-4 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA1368.2 GT-4 Arabidopsis thaliana Tryptophan cluster factors Trihelix
MA1369.1 HDG1 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA1370.1 IDD5 Arabidopsis thaliana C2H2 zinc finger factors
MA1371.1 IDD4 Arabidopsis thaliana C2H2 zinc finger factors
MA1372.1 ZAT10 Arabidopsis thaliana C2H2 zinc finger factors
MA1373.1 GAF1 Arabidopsis thaliana C2H2 zinc finger factors
Showing 10 profiles of page 176 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.