JASPAR CORE

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Total 2430 profiles

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ID Name Species Class Family Sequence logo
MA1292.1 MYB27 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1293.1 MYB57 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1294.1 MYB62 Arabidopsis thaliana Tryptophan cluster factors Myb
MA1295.1 WRKY20 Arabidopsis thaliana GCM domain factors WRKY
MA1296.1 WRKY46 Arabidopsis thaliana GCM domain factors WRKY
MA1297.1 WRKY26 Arabidopsis thaliana GCM domain factors WRKY
MA1298.1 WRKY29 Arabidopsis thaliana GCM domain factors WRKY
MA1299.1 WRKY17 Arabidopsis thaliana GCM domain factors WRKY
MA1300.1 WRKY6 Arabidopsis thaliana GCM domain factors WRKY
MA1301.1 WRKY33 Arabidopsis thaliana GCM domain factors WRKY
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.