JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1263.1 ERF055 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1264.1 ERF095 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1265.1 ERF015 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1265.2 ERF015 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1266.1 RAP2-11 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1267.1 DOF5.8 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA1268.1 CDF5 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA1269.1 DOF4.5 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA1270.1 DOF3.2 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA1272.1 DOF2.2 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
Showing 10 profiles of page 165 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.