JASPAR CORE

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Total 2430 profiles

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ID Name Species Class Family Sequence logo
MA1183.1 RVE6 Arabidopsis thaliana Tryptophan cluster factors Myb-related
MA1184.1 RVE1 Arabidopsis thaliana Tryptophan cluster factors Myb-related
MA1185.1 LHY Arabidopsis thaliana Tryptophan cluster factors Myb-related
MA1186.1 YAB4 Arabidopsis thaliana Tryptophan cluster factors Myb-related
MA1187.1 RVE4 Arabidopsis thaliana Tryptophan cluster factors Myb-related
MA1188.1 At3g11280 Arabidopsis thaliana Tryptophan cluster factors Myb-related
MA1189.1 AT5G61620 Arabidopsis thaliana Tryptophan cluster factors Myb-related
MA1190.1 RVE5 Arabidopsis thaliana Tryptophan cluster factors Myb-related
MA1191.1 RVE7L Arabidopsis thaliana Tryptophan cluster factors Myb-related
MA1192.1 DIV1 Arabidopsis thaliana Tryptophan cluster factors Myb-related
Showing 10 profiles of page 157 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.