JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1001.2 ERF11 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1001.3 ERF11 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1004.1 ERF13 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1005.1 ERF3 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1005.2 ERF3 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1006.1 ERF6 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA1007.1 PHYPADRAFT_173530 Physcomitrium patens AP2/EREBP ERF/DREB
MA1008.1 PHYPADRAFT_182268 Physcomitrium patens AP2/EREBP ERF/DREB
MA1009.1 ARF3 Arabidopsis thaliana B3 ARF
MA1010.1 PHYPADRAFT_64121 Physcomitrium patens AP2/EREBP ERF/DREB
Showing 10 profiles of page 136 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.