JASPAR CORE

  1. Home
  2. Collection core

Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0949.1 ARR2 Arabidopsis thaliana Tryptophan cluster factors GARP_ARR-B
MA0950.1 ATHB-12 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0951.1 ATHB-16 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0952.1 ATHB-51 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0953.1 ATHB-6 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0954.1 ATHB-7 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0954.2 ATHB-7 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0955.1 POPTR_0002s00440g Populus trichocarpa C2H2 zinc finger factors SBP
MA0956.1 BEE2 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0957.1 BHLH3 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
Showing 10 profiles of page 130 from 243 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.