JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0906.1 HOXC12 Homo sapiens Homeo domain factors HOX
MA0907.1 HOXC13 Homo sapiens Homeo domain factors HOX
MA0908.1 HOXD11 Homo sapiens Homeo domain factors HOX
MA0909.1 HOXD13 Homo sapiens Homeo domain factors HOX
MA0909.2 HOXD13 Homo sapiens Homeo domain factors HOX
MA0909.3 Hoxd13 Mus musculus Homeo domain factors HOX
MA0910.1 Hoxd8 Mus musculus Homeo domain factors HOX
MA0910.2 HOXD8 Homo sapiens Homeo domain factors HOX
MA0911.1 Hoxa11 Mus musculus Homeo domain factors HOX
MA0912.1 Hoxd3 Mus musculus Homeo domain factors HOX
Showing 10 profiles of page 125 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.