JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0793.1 POU6F2 Homo sapiens Homeo domain factors POU domain factors
MA0794.1 PROX1 Homo sapiens Homeo domain factors HD-PROS factors
MA0795.1 SMAD3 Homo sapiens SMAD/NF-1 DNA-binding domain factors SMAD factors
MA0796.1 TGIF1 Homo sapiens Homeo domain factors TALE-type homeo domain factors
MA0797.1 TGIF2 Homo sapiens Homeo domain factors TALE-type homeo domain factors
MA0798.1 RFX3 Homo sapiens Fork head/winged helix factors RFX-related factors
MA0798.2 RFX3 Homo sapiens Fork head/winged helix factors RFX-related factors
MA0798.3 RFX3 Homo sapiens Fork head/winged helix factors RFX-related factors
MA0799.1 RFX4 Homo sapiens Fork head/winged helix factors RFX-related factors
MA0799.2 RFX4 Homo sapiens Fork head/winged helix factors RFX-related factors
Showing 10 profiles of page 110 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.