JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0727.1 NR3C2 Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0728.1 Nr2F6 Mus musculus Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0729.1 RARA Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA0730.1 RARA Homo sapiens Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA0731.1 BCL6B Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0732.1 EGR3 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0733.1 EGR4 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0734.1 GLI2 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0734.2 GLI2 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0734.3 Gli2 Mus musculus C2H2 zinc finger factors More than 3 adjacent zinc fingers
Showing 10 profiles of page 101 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.