JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0718.1 RAX Homo sapiens Homeo domain factors Paired-related HD factors
MA0719.1 RHOXF1 Homo sapiens Homeo domain factors Paired-related HD factors
MA0720.1 Shox2 Mus musculus Homeo domain factors Paired-related HD factors
MA0721.1 UNCX Homo sapiens Homeo domain factors Paired-related HD factors
MA0722.1 VAX1 Homo sapiens Homeo domain factors NK
MA0723.1 VAX2 Homo sapiens Homeo domain factors NK
MA0723.2 VAX2 Homo sapiens Homeo domain factors NK
MA0724.1 VENTX Homo sapiens Homeo domain factors NK
MA0725.1 VSX1 Homo sapiens Homeo domain factors Paired-related HD factors
MA0726.1 VSX2 Homo sapiens Homeo domain factors Paired-related HD factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.