JASPAR Collection UNVALIDATED

  1. Home
  2. Collection UNVALIDATED

Total 551 profiles

These profiles are regarded as unvalidated because our curators failed to find any orthogonal support from existing literature. We encourage the community to perform experiments and/or point us to literature that our curators missed in order to support these profiles.
Display profiles
ID Name Species Class Family Sequence logo
UN0457.1 Nfil3-b Ciona intestinalis Basic leucine zipper factors (bZIP) CEBP-related
UN0458.1 Nkx2-3-5-6 Ciona intestinalis Homeo domain factors NK
UN0459.1 NR2C1-2 Ciona intestinalis Nuclear receptors with C4 zinc fingers XR-related receptors (NR2)
UN0460.1 Osr1-2-b Ciona intestinalis C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
UN0461.1 p53-a Ciona intestinalis p53 domain factors p53-related factors
UN0462.1 Pax2-5-8-a Ciona intestinalis Paired box factors Paired domain only
UN0463.1 Pax3-7-like Ciona intestinalis Paired box factors Paired plus homeo domain
UN0464.1 Pax6 Ciona intestinalis Paired box factors Paired plus homeo domain
UN0465.1 Pknox Ciona intestinalis Homeo domain factors TALE-type homeo domain factors
UN0466.1 Pou4 Ciona intestinalis Homeo domain factors POU domain factors
Showing 10 profiles of page 33 from 56 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.