JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0709.1 Msx3 Mus musculus Homeo domain factors NK
MA0710.1 NOTO Homo sapiens Homeo domain factors NK
MA0711.1 OTX1 Homo sapiens Homeo domain factors Paired-related HD factors
MA0712.1 OTX2 Homo sapiens Homeo domain factors Paired-related HD factors
MA0712.2 OTX2 Homo sapiens Homeo domain factors Paired-related HD factors
MA0713.1 PHOX2A Homo sapiens Homeo domain factors Paired-related HD factors
MA0714.1 PITX3 Homo sapiens Homeo domain factors Paired-related HD factors
MA0715.1 PROP1 Homo sapiens Homeo domain factors Paired-related HD factors
MA0716.1 PRRX1 Homo sapiens Homeo domain factors Paired-related HD factors
MA0717.1 RAX2 Homo sapiens Homeo domain factors Paired-related HD factors
Showing 10 profiles of page 99 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.