JASPAR CORE

  1. Home
  2. Collection CORE

Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0249.1 twi Drosophila melanogaster Basic helix-loop-helix factors (bHLH)
MA0249.2 twi Drosophila melanogaster Basic helix-loop-helix factors (bHLH)
MA0250.1 unc-4 Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0251.1 unpg Drosophila melanogaster Homeo domain factors
MA0252.1 vis Drosophila melanogaster Homeo domain factors
MA0253.1 vnd Drosophila melanogaster Homeo domain factors NK
MA0254.1 vvl Drosophila melanogaster Homeo domain factors POU domain factors
MA0255.1 z Drosophila melanogaster
MA0256.1 zen Drosophila melanogaster Homeo domain factors
MA0257.1 zen2 Drosophila melanogaster Homeo domain factors
MA0258.1 ESR2 Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0258.2 ESR2 Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0259.1 ARNT::HIF1A Homo sapiens Oryctolagus cuniculus Mus musculus Rattus rattus Basic helix-loop-helix factors (bHLH)::Basic helix-loop-helix factors (bHLH) PAS domain factors::PAS domain factors
MA0260.1 che-1 Caenorhabditis elegans C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0261.1 lin-14 Caenorhabditis elegans
MA0262.1 mab-3 Caenorhabditis elegans DM-type intertwined zinc finger factors
MA0263.1 ceh-10::ttx-3 Caenorhabditis elegans Homeo domain factors::Homeo domain factors Paired-related HD factors::HD-LIM factors
MA0264.1 ceh-22 Caenorhabditis elegans Homeo domain factors NK
MA0265.1 ABF1 Saccharomyces cerevisiae Basic helix-loop-helix factors (bHLH) Tal-related
MA0265.2 ABF1 Saccharomyces cerevisiae Basic helix-loop-helix factors (bHLH) Tal-related
MA0266.1 ABF2 Saccharomyces cerevisiae High-mobility group (HMG) domain factors
MA0267.1 ACE2 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0268.1 ADR1 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0269.1 AFT1 Saccharomyces cerevisiae
MA0270.1 AFT2 Saccharomyces cerevisiae
MA0271.1 ARG80 Saccharomyces cerevisiae MADS box factors
MA0272.1 ARG81 Saccharomyces cerevisiae C6 zinc cluster factors
MA0273.1 ARO80 Saccharomyces cerevisiae C6 zinc cluster factors
MA0274.1 ARR1 Saccharomyces cerevisiae Basic leucine zipper factors (bZIP)
MA0275.1 ASG1 Saccharomyces cerevisiae C6 zinc cluster factors
MA0276.1 ASH1 Saccharomyces cerevisiae Other C4 zinc finger-type factors C4-GATA-related
MA0277.1 AZF1 Saccharomyces cerevisiae C2H2 zinc finger factors
MA0278.1 BAS1 Saccharomyces cerevisiae Tryptophan cluster factors Myb/SANT domain factors
MA0279.1 CAD1 Saccharomyces cerevisiae Basic leucine zipper factors (bZIP)
MA0279.2 CAD1 Saccharomyces cerevisiae Basic leucine zipper factors (bZIP)
MA0280.1 CAT8 Saccharomyces cerevisiae C6 zinc cluster factors
MA0281.1 CBF1 Saccharomyces cerevisiae Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0281.2 CBF1 Saccharomyces cerevisiae Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0282.1 CEP3 Saccharomyces cerevisiae C6 zinc cluster factors
MA0283.1 CHA4 Saccharomyces cerevisiae C6 zinc cluster factors
MA0284.1 CIN5 Saccharomyces cerevisiae Basic leucine zipper factors (bZIP)
MA0284.2 CIN5 Saccharomyces cerevisiae Basic leucine zipper factors (bZIP)
MA0285.1 CRZ1 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0286.1 CST6 Saccharomyces cerevisiae Basic leucine zipper factors (bZIP)
MA0287.1 CUP2 Saccharomyces cerevisiae Copper-fist DNA-binding domain
MA0288.1 CUP9 Saccharomyces cerevisiae Homeo domain factors TALE-type homeo domain factors
MA0289.1 DAL80 Saccharomyces cerevisiae Other C4 zinc finger-type factors C4-GATA-related
MA0290.1 DAL81 Saccharomyces cerevisiae C6 zinc cluster factors
MA0291.1 DAL82 Saccharomyces cerevisiae
MA0292.1 ECM22 Saccharomyces cerevisiae C6 zinc cluster factors
Showing 50 profiles of page 9 from 49 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.