JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0627.1 Pou2f3 Mus musculus Homeo domain factors POU domain factors
MA0627.2 POU2F3 Homo sapiens Homeo domain factors POU domain factors
MA0628.1 POU6F1 Homo sapiens Homeo domain factors POU domain factors
MA0629.1 Rhox11 Mus musculus Homeo domain factors Paired-related HD factors
MA0630.1 SHOX Homo sapiens Homeo domain factors Paired-related HD factors
MA0631.1 Six3 Mus musculus Homeo domain factors HD-SINE
MA0632.1 Tcfl5 Mus musculus Basic helix-loop-helix factors (bHLH) PAS domain factors
MA0632.2 TCFL5 Homo sapiens Basic helix-loop-helix factors (bHLH) PAS domain factors
MA0633.1 Twist2 Mus musculus Basic helix-loop-helix factors (bHLH) Tal-related
MA0633.2 Twist2 Mus musculus Basic helix-loop-helix factors (bHLH) Tal-related
Showing 10 profiles of page 88 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.