JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0612.2 EMX1 Homo sapiens Homeo domain factors NK
MA0613.1 FOXG1 Homo sapiens Fork head/winged helix factors FOX
MA0614.1 Foxj2 Mus musculus Fork head/winged helix factors FOX
MA0615.1 Gmeb1 Mus musculus SAND domain factors GMEB
MA0616.1 Hes2 Mus musculus Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA0616.2 HES2 Homo sapiens Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA0618.1 LBX1 Homo sapiens Homeo domain factors NK
MA0619.1 LIN54 Gallus gallus CRC domain
MA0620.1 Mitf Mus musculus Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0620.2 MITF Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.