JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0593.1 FOXP2 Homo sapiens Fork head/winged helix factors FOX
MA0594.1 Hoxa9 Mus musculus Homeo domain factors HOX
MA0594.2 HOXA9 Homo sapiens Homeo domain factors HOX
MA0595.1 SREBF1 Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0596.1 SREBF2 Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0597.1 THAP1 Homo sapiens C2CH THAP-type zinc finger factors THAP-related factors
MA0597.2 THAP1 Homo sapiens C2CH THAP-type zinc finger factors THAP-related factors
MA0598.1 EHF Homo sapiens Tryptophan cluster factors Ets-related
MA0598.2 EHF Homo sapiens Tryptophan cluster factors Ets-related
MA0598.3 EHF Homo sapiens Tryptophan cluster factors Ets-related
Showing 10 profiles of page 83 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.