JASPAR CORE

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Total 2430 profiles

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ID Name Species Class Family Sequence logo
MA0568.1 MYC3 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0569.1 MYC4 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH)
MA0570.1 ABF1 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group A
MA0570.2 ABF1 Arabidopsis thaliana Basic leucine zipper factors (bZIP) Group A
MA0571.1 ANT Arabidopsis thaliana AP2/EREBP AP2
MA0573.1 ATHB-9 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0574.1 MYB15 Arabidopsis thaliana Tryptophan cluster factors Myb
MA0575.1 MYB77 Arabidopsis thaliana Tryptophan cluster factors Myb
MA0576.1 RAX3 Arabidopsis thaliana Tryptophan cluster factors Myb
MA0577.1 SPL3 Arabidopsis thaliana C2H2 zinc finger factors SBP
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.