JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0508.2 PRDM1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0508.3 PRDM1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0509.1 Rfx1 Mus musculus Fork head/winged helix factors RFX-related factors
MA0509.2 RFX1 Homo sapiens Fork head/winged helix factors RFX-related factors
MA0509.3 RFX1 Homo sapiens Fork head/winged helix factors RFX-related factors
MA0510.1 RFX5 Homo sapiens Fork head/winged helix factors RFX-related factors
MA0510.2 RFX5 Homo sapiens Fork head/winged helix factors RFX-related factors
MA0511.1 RUNX2 Homo sapiens Runt domain factors Runt-related factors
MA0511.2 RUNX2 Homo sapiens Runt domain factors Runt-related factors
MA0512.1 Rxra Mus musculus Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
Showing 10 profiles of page 72 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.