JASPAR CORE

  1. Home
  2. Collection CORE

Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0464.2 BHLHE40 Homo sapiens Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA0465.1 CDX2 Homo sapiens Homeo domain factors HOX
MA0465.2 CDX2 Homo sapiens Homeo domain factors HOX
MA0466.1 CEBPB Homo sapiens Basic leucine zipper factors (bZIP) CEBP-related
MA0466.2 CEBPB Homo sapiens Basic leucine zipper factors (bZIP) CEBP-related
MA0466.3 CEBPB Homo sapiens Basic leucine zipper factors (bZIP) CEBP-related
MA0467.1 Crx Mus musculus Homeo domain factors Paired-related HD factors
MA0467.2 Crx Mus musculus Homeo domain factors Paired-related HD factors
MA0468.1 DUX4 Homo sapiens Homeo domain factors Paired-related HD factors
MA0469.1 E2F3 Mus musculus Fork head/winged helix factors E2F
Showing 10 profiles of page 64 from 243 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.