JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0389.1 SRD1 Saccharomyces cerevisiae Other C4 zinc finger-type factors C4-GATA-related
MA0390.1 STB3 Saccharomyces cerevisiae
MA0391.1 STB4 Saccharomyces cerevisiae C6 zinc cluster factors
MA0392.1 STB5 Saccharomyces cerevisiae C6 zinc cluster factors
MA0393.1 STE12 Saccharomyces cerevisiae
MA0394.1 STP1 Saccharomyces cerevisiae C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0395.1 STP2 Saccharomyces cerevisiae C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0396.1 STP3 Saccharomyces cerevisiae C2H2 zinc finger factors
MA0397.1 STP4 Saccharomyces cerevisiae C2H2 zinc finger factors
MA0398.1 SUM1 Saccharomyces cerevisiae A.T hook factors
Showing 10 profiles of page 56 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.