JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0331.1 MCM1 Saccharomyces cerevisiae MADS box factors
MA0332.1 MET28 Saccharomyces cerevisiae Basic leucine zipper factors (bZIP)
MA0333.1 MET31 Saccharomyces cerevisiae C2H2 zinc finger factors
MA0334.1 MET32 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0335.1 MET4 Saccharomyces cerevisiae Basic leucine zipper factors (bZIP)
MA0336.1 MGA1 Saccharomyces cerevisiae Heat shock factors HSF factors
MA0337.1 MIG1 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0338.1 MIG2 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0339.1 MIG3 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA0340.1 MOT3 Saccharomyces cerevisiae C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
Showing 10 profiles of page 50 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.