JASPAR CORE

  1. Home
  2. Collection CORE

Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1872.1 FoxO Ciona intestinalis Fork head/winged helix factors FOX
MA1873.1 FoxQ Ciona intestinalis Fork head/winged helix factors FOX
MA1874.1 GATA-a Ciona intestinalis Other C4 zinc finger-type factors C4-GATA-related
MA1875.1 GATA1/2/3 Ciona intestinalis Other C4 zinc finger-type factors C4-GATA-related
MA1876.1 Gsx Ciona intestinalis Homeo domain factors HOX
MA1877.1 Hes-b Ciona intestinalis Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA1878.1 Hes-c Ciona intestinalis Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA1879.1 Hex Ciona intestinalis Homeo domain factors
MA1880.1 Hey Ciona intestinalis Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA1881.1 Hmbox1 Ciona intestinalis Homeo domain factors POU domain factors
MA1882.1 Hnf1 Ciona intestinalis Homeo domain factors POU domain factors
MA1883.1 Hox1 Ciona intestinalis Homeo domain factors HOX
MA1884.1 Hox3 Ciona intestinalis Homeo domain factors HOX
MA1885.1 Hox4 Ciona intestinalis Homeo domain factors HOX
MA1886.1 Hox5 Ciona intestinalis Homeo domain factors HOX
MA1887.1 Hsf1-2-4 Ciona intestinalis Heat shock factors HSF factors
MA1888.1 Irf-b Ciona intestinalis Tryptophan cluster factors Interferon-regulatory factors
MA1889.1 Isx Ciona intestinalis Homeo domain factors Paired-related HD factors
MA1890.1 Klf15 Ciona intestinalis C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA1891.1 Klf3/8/12 Ciona intestinalis C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA1892.1 Klf5-like Ciona intestinalis C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA1893.1 Klf6-7-like Ciona intestinalis C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA1894.1 large-Maf Ciona intestinalis Basic leucine zipper factors (bZIP) Maf-related
MA1895.1 Lhx3/4 Ciona intestinalis Homeo domain factors HD-LIM
MA1896.1 Lmx-b Ciona intestinalis Homeo domain factors HD-LIM
MA1897.1 Max Ciona intestinalis Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA1898.1 Meox Ciona intestinalis Homeo domain factors HOX
MA1899.1 Mitf Ciona intestinalis Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA1900.1 Mnx Ciona intestinalis Homeo domain factors HOX
MA1901.1 Msx Ciona intestinalis Homeo domain factors NK
MA1902.1 NFkb Ciona intestinalis Rel homology region (RHR) factors NF-kappaB-related factors
MA1903.1 Nk-1 Ciona intestinalis Homeo domain factors NK
MA1904.1 Nk-3 Ciona intestinalis Homeo domain factors NK
MA1905.1 Nkx3 Ciona intestinalis Homeo domain factors NK
MA1906.1 Noto Ciona intestinalis Homeo domain factors NK
MA1907.1 Otp Ciona intestinalis Homeo domain factors Paired-related HD factors
MA1908.1 Otx Ciona intestinalis Homeo domain factors Paired-related HD factors
MA1909.1 Prop Ciona intestinalis Homeo domain factors Paired-related HD factors
MA1910.1 Rax Ciona intestinalis Homeo domain factors Paired-related HD factors
MA1911.1 Rel Ciona intestinalis Rel homology region (RHR) factors NF-kappaB-related factors
MA1912.1 Six3/6 Ciona intestinalis Homeo domain factors HD-SINE
MA1913.1 small-Maf Ciona intestinalis Basic leucine zipper factors (bZIP) Maf-related
MA1914.1 Snail Ciona intestinalis C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1915.1 SoxB1 Ciona intestinalis High-mobility group (HMG) domain factors SOX-related factors
MA1916.1 SoxB2 Ciona intestinalis High-mobility group (HMG) domain factors SOX-related factors
MA1917.1 SoxC Ciona intestinalis High-mobility group (HMG) domain factors SOX-related factors
MA1918.1 SoxF Ciona intestinalis High-mobility group (HMG) domain factors SOX-related factors
MA1919.1 Tbox-a Ciona intestinalis T-Box factors TBX1-related factors
MA1920.1 Tbox-b Ciona intestinalis T-Box factors TBX1-related factors
MA1921.1 Tbx15/18/22 Ciona intestinalis T-Box factors TBX1-related factors
Showing 50 profiles of page 46 from 49 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.