JASPAR CORE

  1. Home
  2. Collection CORE

Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0158.2 HOXA5 Homo sapiens Homeo domain factors HOX
MA0159.1 RARA::RXRA Homo sapiens Nuclear receptors with C4 zinc fingers::Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2)
MA0160.1 NR4A2 Homo sapiens Mus musculus Rattus norvegicus Nuclear receptors with C4 zinc fingers NGFI-B-related receptors (NR4)
MA0160.2 NR4A2 Homo sapiens Nuclear receptors with C4 zinc fingers NGFI-B-related receptors (NR4)
MA0161.1 NFIC Homo sapiens SMAD/NF-1 DNA-binding domain factors Nuclear factor 1
MA0161.2 NFIC Homo sapiens SMAD/NF-1 DNA-binding domain factors Nuclear factor 1
MA0162.1 Egr1 Mus musculus C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0162.2 EGR1 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0162.3 EGR1 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0162.4 EGR1 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0163.1 PLAG1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0164.1 Nr2e3 Mus musculus Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0165.1 Abd-B Drosophila melanogaster Homeo domain factors HOX
MA0166.1 Antp Drosophila melanogaster Homeo domain factors HOX
MA0167.1 Awh Drosophila melanogaster Homeo domain factors
MA0168.1 B-H1 Drosophila melanogaster Homeo domain factors HOX
MA0169.1 B-H2 Drosophila melanogaster Homeo domain factors HOX
MA0170.1 C15 Drosophila melanogaster Homeo domain factors
MA0171.1 CG11085 Drosophila melanogaster Homeo domain factors
MA0172.1 CG11294 Drosophila melanogaster Homeo domain factors
MA0173.1 CG11617 Drosophila melanogaster Homeo domain factors
MA0174.1 Dbx Drosophila melanogaster Homeo domain factors
MA0175.1 lms Drosophila melanogaster Homeo domain factors
MA0176.1 CG15696-RA Drosophila melanogaster Homeo domain factors
MA0177.1 CG18599 Drosophila melanogaster Homeo domain factors
MA0178.1 CG32105 Drosophila melanogaster Homeo domain factors
MA0179.1 CG32532 Drosophila melanogaster Homeo domain factors
MA0180.1 Vsx2 Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0181.1 Vsx1 Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0182.1 CG4328-RA Drosophila melanogaster Homeo domain factors
MA0183.1 HHEX Drosophila melanogaster Homeo domain factors
MA0184.1 CG9876 Drosophila melanogaster Homeo domain factors
MA0185.1 Deaf1 Drosophila melanogaster SAND domain factors DEAF
MA0186.1 Dfd Drosophila melanogaster Homeo domain factors HOX
MA0187.1 Dll Drosophila melanogaster Homeo domain factors
MA0188.1 Dr Drosophila melanogaster Homeo domain factors NK
MA0189.1 E5 Drosophila melanogaster Homeo domain factors
MA0190.1 Gsc Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0191.1 HGTX Drosophila melanogaster Homeo domain factors NK
MA0192.1 Hmx Drosophila melanogaster Homeo domain factors NK
MA0193.1 schlank Drosophila melanogaster Homeo domain factors
MA0194.1 Lim1 Drosophila melanogaster Homeo domain factors HD-LIM
MA0195.1 Lim3 Drosophila melanogaster Homeo domain factors HD-LIM
MA0196.1 NK7.1 Drosophila melanogaster Homeo domain factors NK
MA0197.1 nub Drosophila melanogaster Homeo domain factors POU domain factors
MA0197.2 nub Drosophila melanogaster Homeo domain factors POU domain factors
MA0198.1 OdsH Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0199.1 Optix Drosophila melanogaster Homeo domain factors HD-SINE
MA0200.1 Pph13 Drosophila melanogaster Homeo domain factors
MA0201.1 Ptx1 Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0202.1 Rx Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0203.1 Scr Drosophila melanogaster Homeo domain factors HOX
MA0204.1 Six4 Drosophila melanogaster Homeo domain factors HD-SINE
MA0205.1 Trl Drosophila melanogaster C2H2 zinc finger factors
MA0205.2 Trl Drosophila melanogaster C2H2 zinc finger factors
MA0206.1 abd-A Drosophila melanogaster Homeo domain factors HOX
MA0207.1 achi Drosophila melanogaster Homeo domain factors
MA0208.1 al Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0209.1 ap Drosophila melanogaster Homeo domain factors
MA0210.1 ara Drosophila melanogaster Homeo domain factors TALE-type homeo domain factors
MA0211.1 bap Drosophila melanogaster Homeo domain factors NK
MA0212.1 bcd Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0213.1 brk Drosophila melanogaster
MA0214.1 bsh Drosophila melanogaster Homeo domain factors NK
MA0215.1 btn Drosophila melanogaster Homeo domain factors
MA0216.1 cad Drosophila melanogaster Homeo domain factors HOX
MA0216.2 cad Drosophila melanogaster Homeo domain factors HOX
MA0217.1 caup Drosophila melanogaster Homeo domain factors TALE-type homeo domain factors
MA0218.1 ct Drosophila melanogaster Homeo domain factors HD-CUT
MA0219.1 ems Drosophila melanogaster Homeo domain factors NK
MA0220.1 en Drosophila melanogaster Homeo domain factors NK
MA0221.1 eve Drosophila melanogaster Homeo domain factors HOX
MA0222.1 exd Drosophila melanogaster Homeo domain factors TALE-type homeo domain factors
MA0224.1 exex Drosophila melanogaster Homeo domain factors
MA0225.1 ftz Drosophila melanogaster Homeo domain factors HOX
MA0226.1 hbn Drosophila melanogaster Homeo domain factors
MA0227.1 hth Drosophila melanogaster Homeo domain factors TALE-type homeo domain factors
MA0228.1 ind Drosophila melanogaster Homeo domain factors
MA0229.1 inv Drosophila melanogaster Homeo domain factors NK
MA0230.1 lab Drosophila melanogaster Homeo domain factors HOX
MA0231.1 lbe Drosophila melanogaster Homeo domain factors
MA0232.1 lbl Drosophila melanogaster Homeo domain factors
MA0233.1 mirr Drosophila melanogaster Homeo domain factors
MA0234.1 oc Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0235.1 onecut Drosophila melanogaster Homeo domain factors HD-CUT
MA0236.1 otp Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0237.1 pan Drosophila melanogaster High-mobility group (HMG) domain factors High Mobility Group box (HMG)
MA0237.2 pan Drosophila melanogaster High-mobility group (HMG) domain factors High Mobility Group box (HMG)
MA0238.1 pb Drosophila melanogaster Homeo domain factors HOX
MA0239.1 prd Drosophila melanogaster Paired box factors
MA0240.1 repo Drosophila melanogaster Homeo domain factors
MA0241.1 ro Drosophila melanogaster Homeo domain factors
MA0242.1 Bgb::run Drosophila melanogaster Runt domain factors::Runt domain factors Runt-related factors::Runt-related factors
MA0243.1 sd Drosophila melanogaster TEA domain factors
MA0244.1 slbo Drosophila melanogaster Basic leucine zipper factors (bZIP) CEBP-related
MA0245.1 slou Drosophila melanogaster Homeo domain factors NK
MA0246.1 so Drosophila melanogaster Homeo domain factors HD-SINE
MA0247.1 tin Drosophila melanogaster Homeo domain factors Homeo
MA0247.2 tin Drosophila melanogaster Homeo domain factors Homeo
MA0248.1 tup Drosophila melanogaster Homeo domain factors HD-LIM
Showing 100 profiles of page 4 from 25 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.