JASPAR CORE

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Total 2430 profiles

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ID Name Species Class Family Sequence logo
MA0202.1 Rx Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0203.1 Scr Drosophila melanogaster Homeo domain factors HOX
MA0204.1 Six4 Drosophila melanogaster Homeo domain factors HD-SINE
MA0205.1 Trl Drosophila melanogaster C2H2 zinc finger factors
MA0205.2 Trl Drosophila melanogaster C2H2 zinc finger factors
MA0206.1 abd-A Drosophila melanogaster Homeo domain factors HOX
MA0207.1 achi Drosophila melanogaster Homeo domain factors
MA0208.1 al Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0209.1 ap Drosophila melanogaster Homeo domain factors
MA0210.1 ara Drosophila melanogaster Homeo domain factors TALE-type homeo domain factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.