JASPAR CORE

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Total 2430 profiles

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ID Name Species Class Family Sequence logo
MA0158.2 HOXA5 Homo sapiens Homeo domain factors HOX
MA0159.1 RARA::RXRA Homo sapiens Nuclear receptors with C4 zinc fingers::Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2)
MA0160.1 NR4A2 Homo sapiens Mus musculus Rattus norvegicus Nuclear receptors with C4 zinc fingers NGFI-B-related receptors (NR4)
MA0160.2 NR4A2 Homo sapiens Nuclear receptors with C4 zinc fingers NGFI-B-related receptors (NR4)
MA0161.1 NFIC Homo sapiens SMAD/NF-1 DNA-binding domain factors Nuclear factor 1
MA0161.2 NFIC Homo sapiens SMAD/NF-1 DNA-binding domain factors Nuclear factor 1
MA0162.1 Egr1 Mus musculus C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0162.2 EGR1 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0162.3 EGR1 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0162.4 EGR1 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
Showing 10 profiles of page 31 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



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Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.