JASPAR CORE

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Total 2430 profiles

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ID Name Species Class Family Sequence logo
MA0877.2 BARHL1 Homo sapiens Homeo domain factors NK
MA0877.3 BARHL1 Homo sapiens Homeo domain factors NK
MA0878.1 CDX1 Homo sapiens Homeo domain factors HOX
MA0878.2 CDX1 Homo sapiens Homeo domain factors HOX
MA0878.3 CDX1 Homo sapiens Homeo domain factors HOX
MA0879.1 Dlx1 Mus musculus Homeo domain factors NK
MA0879.2 DLX1 Homo sapiens Homeo domain factors NK
MA0880.1 Dlx3 Mus musculus Homeo domain factors NK
MA0881.1 Dlx4 Mus musculus Homeo domain factors NK
MA0882.1 DLX6 Homo sapiens Homeo domain factors NK
MA0883.1 Dmbx1 Mus musculus Homeo domain factors Paired-related HD factors
MA0884.1 DUXA Homo sapiens Homeo domain factors Paired-related HD factors
MA0884.2 DUXA Homo sapiens Homeo domain factors Paired-related HD factors
MA0885.1 Dlx2 Mus musculus Homeo domain factors NK
MA0885.2 Dlx2 Mus musculus Homeo domain factors NK
MA0886.1 EMX2 Homo sapiens Homeo domain factors NK
MA0887.1 EVX1 Homo sapiens Homeo domain factors HOX
MA0888.1 EVX2 Homo sapiens Homeo domain factors HOX
MA0889.1 GBX1 Homo sapiens Homeo domain factors HOX
MA0890.1 GBX2 Homo sapiens Homeo domain factors HOX
MA0891.1 GSC2 Homo sapiens Homeo domain factors Paired-related HD factors
MA0892.1 GSX1 Homo sapiens Homeo domain factors HOX
MA0893.1 GSX2 Homo sapiens Homeo domain factors HOX
MA0893.2 GSX2 Homo sapiens Homeo domain factors HOX
MA0894.1 HESX1 Homo sapiens Homeo domain factors Paired-related HD factors
MA0895.1 HMBOX1 Homo sapiens Homeo domain factors POU domain factors
MA0896.1 Hmx1 Mus musculus Homeo domain factors NK
MA0897.1 Hmx2 Mus musculus Homeo domain factors NK
MA0898.1 Hmx3 Mus musculus Homeo domain factors NK
MA0899.1 HOXA10 Homo sapiens Homeo domain factors HOX
MA0900.1 HOXA2 Homo sapiens Homeo domain factors HOX
MA0900.2 HOXA2 Homo sapiens Homeo domain factors HOX
MA0901.1 HOXB13 Homo sapiens Homeo domain factors HOX
MA0901.2 HOXB13 Homo sapiens Homeo domain factors HOX
MA0902.1 HOXB2 Homo sapiens Homeo domain factors HOX
MA0902.2 HOXB2 Homo sapiens Homeo domain factors HOX
MA0903.1 HOXB3 Homo sapiens Homeo domain factors HOX
MA0904.1 Hoxb5 Mus musculus Homeo domain factors HOX
MA0904.2 HOXB5 Homo sapiens Homeo domain factors HOX
MA0905.1 HOXC10 Homo sapiens Homeo domain factors HOX
MA0906.1 HOXC12 Homo sapiens Homeo domain factors HOX
MA0907.1 HOXC13 Homo sapiens Homeo domain factors HOX
MA0908.1 HOXD11 Homo sapiens Homeo domain factors HOX
MA0909.1 HOXD13 Homo sapiens Homeo domain factors HOX
MA0909.2 HOXD13 Homo sapiens Homeo domain factors HOX
MA0909.3 Hoxd13 Mus musculus Homeo domain factors HOX
MA0910.1 Hoxd8 Mus musculus Homeo domain factors HOX
MA0910.2 HOXD8 Homo sapiens Homeo domain factors HOX
MA0911.1 Hoxa11 Mus musculus Homeo domain factors HOX
MA0912.1 Hoxd3 Mus musculus Homeo domain factors HOX
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.