JASPAR CORE

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Total 2430 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0128.1 EmBP-1 Triticum aestivum Basic leucine zipper factors (bZIP) Group G
MA0129.1 TGA1A Nicotiana sp. Basic leucine zipper factors (bZIP) Group D
MA0130.1 ZNF354C Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0131.1 HINFP Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0131.2 HINFP Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0132.1 Pdx1 Mus musculus Homeo domain factors HOX
MA0132.2 PDX1 Homo sapiens Homeo domain factors HOX
MA0135.1 Lhx3 Mus musculus Homeo domain factors HD-LIM
MA0136.1 ELF5 Mus musculus Tryptophan cluster factors Ets-related
MA0136.2 ELF5 Homo sapiens Tryptophan cluster factors Ets-related
Showing 10 profiles of page 25 from 243 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.